Package: agvgd
Type: Package
Title: An R Implementation of the 'Align-GVGD' Method
Version: 0.1.2
Authors@R: c(
    person(given = "Ramiro", family = "Magno",
      email = "ramiro.magno@gmail.com",
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0001-5226-3441")),
    person(given = "Isabel", family = "Duarte",
      email = "iduarte.scientist@gmail.com",
      role = "aut",
      comment = c(ORCID = "0000-0003-0060-2936")),
    person(given = "Ana-Teresa", family = "Maia",
      email = "maia.anateresa@gmail.com", role = "aut", 
      comment = c(ORCID = "0000-0002-0454-9207")),
    person("CINTESIS",
    role = c("cph", "fnd"))
    )
Description: 'Align-GVGD' ('A-GVGD') is a method to predict the impact
        of 'missense' substitutions based on the properties of amino
        acid side chains and protein multiple sequence alignments
        <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the
        original 'Grantham' distance to multiple sequence alignments.
        This package provides an alternative R implementation to the
        web version found on <http://agvgd.hci.utah.edu/>.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
Imports: crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr,
        stringr, tibble, tidyr, vctrs
Suggests: rmarkdown, covr, testthat (>= 3.0.0)
Config/testthat/edition: 3
Depends: R (>= 2.10)
URL: https://maialab.org/agvgd/, https://github.com/maialab/agvgd
BugReports: https://github.com/maialab/agvgd/issues
Enhances: protean (>= 0.1.1)
Remotes: maialab/protean
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://patterninstitute.r-universe.dev
Date/Publication: 2023-12-16 15:22:43 UTC
RemoteUrl: https://github.com/maialab/agvgd
RemoteRef: HEAD
RemoteSha: 4e746e319e67d53f4722794148e6b03299e4ad72
NeedsCompilation: no
Packaged: 2026-06-22 07:57:37 UTC; root
Author: Ramiro Magno [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5226-3441>),
  Isabel Duarte [aut] (ORCID: <https://orcid.org/0000-0003-0060-2936>),
  Ana-Teresa Maia [aut] (ORCID: <https://orcid.org/0000-0002-0454-9207>),
  CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno@gmail.com>