{
  "_id": "6acb72cbfe5cc25786e9039e",
  "Package": "vermeulen",
  "Type": "Package",
  "Title": "Biomarker Data Set by Vermeulen et al. (2009)",
  "Version": "0.1.2",
  "Authors@R": "c(\nperson(given = \"Ramiro\", family = \"Magno\", email = \"rmagno@pattern.institute\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5226-3441\")),\nperson(\"Pattern Institute\",\nrole = c(\"cph\", \"fnd\"))\n)",
  "Description": "The biomarker data set by Vermeulen et al. (2009)\n<doi:10.1016/S1470-2045(09)70154-8> is provided. The data\nsource, however, is by Ruijter et al. (2013)\n<doi:10.1016/j.ymeth.2012.08.011>. The original data set may be\ndownloaded from\n<https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>.\nThis data set is for a real-time quantitative polymerase chain\nreaction (PCR) experiment that comprises the raw fluorescence\ndata of 24,576 amplification curves. This data set comprises 59\ngenes of interest and 5 reference genes. Each gene was assessed\non 366 neuroblastoma complementary DNA (cDNA) samples and on 18\nstandard dilution series samples (10-fold 5-point dilution\nseries x 3 replicates + no template controls (NTC) x 3\nreplicates).",
  "License": "CC BY 4.0",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "Roxygen": "list(markdown = TRUE)",
  "Language": "en-US",
  "URL": "https://github.com/ramiromagno/vermeulen,\nhttps://rmagno.eu/vermeulen/",
  "BugReports": "https://github.com/ramiromagno/vermeulen/issues",
  "Config/testthat/edition": "3",
  "Repository": "https://patterninstitute.r-universe.dev",
  "Date/Publication": "2024-04-22 20:56:30 UTC",
  "RemoteUrl": "https://github.com/ramiromagno/vermeulen",
  "RemoteRef": "HEAD",
  "RemoteSha": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-11 11:25:05 UTC",
    "User": "root"
  },
  "Author": "Ramiro Magno [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-5226-3441>),\nPattern Institute [cph, fnd]",
  "Maintainer": "Ramiro Magno <rmagno@pattern.institute>",
  "_user": "patterninstitute",
  "_type": "src",
  "_file": "vermeulen_0.1.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/45e24a1217751403379fa9052f269dfc60f6291f48e58af23f98020209f0d751",
  "_filesize": 2035592,
  "_sha256": "45e24a1217751403379fa9052f269dfc60f6291f48e58af23f98020209f0d751",
  "_expires": "2027-01-19T11:28:09.000Z",
  "_created": "2026-10-11T11:25:05.000Z",
  "_published": "2026-10-11T11:28:10.918Z",
  "_buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114458387079,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11700553438"
    },
    {
      "job": 114458387055,
      "time": 119,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700099430"
    },
    {
      "job": 114458387152,
      "time": 117,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11700927735"
    },
    {
      "job": 114458387130,
      "time": 109,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700169324"
    },
    {
      "job": 114457884423,
      "time": 167,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11700049370"
    },
    {
      "job": 114458387064,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11700608303"
    },
    {
      "job": 114458387166,
      "time": 90,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11700254112"
    },
    {
      "job": 114458387097,
      "time": 80,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11700563315"
    },
    {
      "job": 114458387135,
      "time": 91,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11699949821"
    }
  ],
  "_upstream": "https://github.com/ramiromagno/vermeulen",
  "_commit": {
    "id": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
    "author": "Ramiro Magno <rmagno@pattern.institute>",
    "committer": "Ramiro Magno <rmagno@pattern.institute>",
    "message": "Add rhub workflow\n",
    "time": 1713819390
  },
  "_maintainer": {
    "name": "Ramiro Magno",
    "email": "rmagno@pattern.institute",
    "login": "ramiromagno",
    "description": "Lead Data Scientist",
    "uuid": 19862384,
    "orcid": "0000-0001-5226-3441"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "memoise",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "spelling",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "tibble",
      "role": "Suggests"
    }
  ],
  "_owner": "ramiromagno",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "qpcr",
    "qpcr-analysis"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "ramiromagno",
      "count": 28,
      "uuid": 19862384
    }
  ],
  "_userbio": {
    "uuid": 115077578,
    "type": "organization",
    "name": "Pattern Institute",
    "followers": 9,
    "description": "Non-profit research organization"
  },
  "_downloads": {
    "count": 364,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vermeulen"
  },
  "_devurl": "https://github.com/ramiromagno/vermeulen",
  "_pkgdown": "https://rmagno.eu/vermeulen/",
  "_searchresults": 2,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/vermeulen.html"
  ],
  "_homeurl": "https://github.com/ramiromagno/vermeulen",
  "_realowner": "ramiromagno",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2022-11-10"
    },
    {
      "version": "0.1.2",
      "date": "2024-04-23"
    }
  ],
  "_exports": [
    "get_biomarker_dataset"
  ],
  "_help": [
    {
      "page": "get_biomarker_dataset",
      "title": "Import the Biomarker data set",
      "topics": [
        "get_biomarker_dataset"
      ]
    }
  ],
  "_readme": "https://github.com/ramiromagno/vermeulen/raw/HEAD/README.md",
  "_rundeps": [
    "cachem",
    "fastmap",
    "memoise",
    "rlang"
  ],
  "_score": 3.1760912590556813,
  "_indexed": false,
  "_nocasepkg": "vermeulen",
  "_universes": [
    "patterninstitute"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-10-11T11:27:25.000Z",
      "distro": "resolute",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/aeb006ef5b0941b85cc2b41faae54b71015b9d0e6a4ff8870e7b3c92930db9f1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.2",
      "date": "2026-10-11T11:26:53.000Z",
      "distro": "resolute",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/2183e5265d921fec0863359bfe985b674b6fdafa405d38cc75d02cbe48c3fcef",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-10-11T11:27:06.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/ad3e3dc352a352c1ac142da04adaeef8874eee7d17f420e078bd92a9572774bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.2",
      "date": "2026-10-11T11:26:45.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/4af6ea4f9965ccb58d960ce4dbb98bee8aa01a3743acf4bc9ecdfc8f3d8fb479",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.2",
      "date": "2026-10-11T11:27:00.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/5b8799cea79e79865be3cec36f00cfe1ef5abcab7773301f056f333e02495988",
      "status": "success",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-10-11T11:26:18.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/0892bcf10d59a7935cd9b6b3b8ff0df36c9d482af77a756edaf46ee5532a7dcf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-10-11T11:26:06.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/3b9ca4ac03a82858caf150249550592fa3ec1f82d1f11d146a4fa851eeba704d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.2",
      "date": "2026-10-11T11:26:18.000Z",
      "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50",
      "fileid": "https://r2.ropensci.org/85d14d75f0a898cea9f414996d4b451ff191d64db029e9c4f92b2bf790d2d4d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/38135300900"
    }
  ]
}