{ "_id": "6ae095308d250e7ad09ecd8b", "Package": "vermeulen", "Type": "Package", "Title": "Biomarker Data Set by Vermeulen et al. (2009)", "Version": "0.1.2", "Authors@R": "c(\nperson(given = \"Ramiro\", family = \"Magno\", email = \"rmagno@pattern.institute\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-5226-3441\")),\nperson(\"Pattern Institute\",\nrole = c(\"cph\", \"fnd\"))\n)", "Description": "The biomarker data set by Vermeulen et al. (2009)\n is provided. The data\nsource, however, is by Ruijter et al. (2013)\n. The original data set may be\ndownloaded from\n.\nThis data set is for a real-time quantitative polymerase chain\nreaction (PCR) experiment that comprises the raw fluorescence\ndata of 24,576 amplification curves. This data set comprises 59\ngenes of interest and 5 reference genes. Each gene was assessed\non 366 neuroblastoma complementary DNA (cDNA) samples and on 18\nstandard dilution series samples (10-fold 5-point dilution\nseries x 3 replicates + no template controls (NTC) x 3\nreplicates).", "License": "CC BY 4.0", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "Roxygen": "list(markdown = TRUE)", "Language": "en-US", "URL": "https://github.com/ramiromagno/vermeulen,\nhttps://rmagno.eu/vermeulen/", "BugReports": "https://github.com/ramiromagno/vermeulen/issues", "Config/testthat/edition": "3", "Repository": "https://patterninstitute.r-universe.dev", "Date/Publication": "2024-04-22 20:56:30 UTC", "RemoteUrl": "https://github.com/ramiromagno/vermeulen", "RemoteRef": "HEAD", "RemoteSha": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-27 12:08:01 UTC", "User": "root" }, "Author": "Ramiro Magno [aut, cre] (ORCID:\n),\nPattern Institute [cph, fnd]", "Maintainer": "Ramiro Magno ", "_user": "patterninstitute", "_type": "src", "_file": "vermeulen_0.1.2.tar.gz", "_fileid": "https://r2.ropensci.org/cf975f02feeea4513075c327ff6b49b3ed25a3adbad09f1bb36494c6bba72a93", "_filesize": 2035588, "_sha256": "cf975f02feeea4513075c327ff6b49b3ed25a3adbad09f1bb36494c6bba72a93", "_expires": "2027-02-04T12:12:30.000Z", "_created": "2026-10-27T12:08:01.000Z", "_published": "2026-10-27T12:12:32.037Z", "_upstream": "https://github.com/ramiromagno/vermeulen", "_status": "success", "_maintainer": { "name": "Ramiro Magno", "email": "rmagno@pattern.institute", "login": "ramiromagno", "description": "Lead Data Scientist", "uuid": 19862384, "orcid": "0000-0001-5226-3441" }, "_jobs": [ { "job": 122179753115, "time": 117, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12732602922" }, { "job": 122179753054, "time": 129, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12733266386" }, { "job": 122179753082, "time": 216, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12733141959" }, { "job": 122179753340, "time": 151, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12732797641" }, { "job": 122178314176, "time": 198, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12733166184" }, { "job": 122179753244, "time": 95, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12733775411" }, { "job": 122179753153, "time": 81, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12732398331" }, { "job": 122179753111, "time": 96, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12732842385" }, { "job": 122179753107, "time": 91, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12733361069" } ], "_buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313", "_commit": { "id": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "author": "Ramiro Magno ", "committer": "Ramiro Magno ", "message": "Add rhub workflow\n", "time": 1713819390 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "memoise", "role": "Imports" }, { "package": "dplyr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "tibble", "role": "Suggests" } ], "_owner": "ramiromagno", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "qpcr", "qpcr-analysis" ], "_stars": 3, "_contributors": [ { "user": "ramiromagno", "count": 28, "uuid": 19862384 } ], "_userbio": { "uuid": 115077578, "type": "organization", "name": "Pattern Institute", "followers": 9, "description": "Non-profit research organization" }, "_downloads": { "count": 344, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/vermeulen" }, "_devurl": "https://github.com/ramiromagno/vermeulen", "_pkgdown": "https://rmagno.eu/vermeulen/", "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/vermeulen.html" ], "_homeurl": "https://github.com/ramiromagno/vermeulen", "_realowner": "ramiromagno", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2022-11-10" }, { "version": "0.1.2", "date": "2024-04-23" } ], "_exports": [ "get_biomarker_dataset" ], "_help": [ { "page": "get_biomarker_dataset", "title": "Import the Biomarker data set", "topics": [ "get_biomarker_dataset" ] } ], "_readme": "https://github.com/ramiromagno/vermeulen/raw/HEAD/README.md", "_rundeps": [ "cachem", "fastmap", "memoise", "rlang" ], "_score": 3.1760912590556813, "_indexed": false, "_nocasepkg": "vermeulen", "_universes": [ "patterninstitute" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-10-27T12:09:54.000Z", "distro": "resolute", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/4957de766e946565ef9977de8d85d795e43fbaac5a72a2ee5a624ac77a19e199", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.6.1", "os": "linux", "version": "0.1.2", "date": "2026-10-27T12:09:56.000Z", "distro": "resolute", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/7e393862032ba7c804b5684729724a50b8f77a22388b0d8054743c40bc7a3700", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-10-27T12:10:52.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/b4afdea4a31d482103377a8840ff0fb8cfefbbabeb17c2e1ccac6b22a850d75f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.6.1", "os": "mac", "version": "0.1.2", "date": "2026-10-27T12:10:19.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/4942b4e9920808c515799d2222b8c433b0079e2bfdc4e8698c599691a81a864a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-10-27T12:09:50.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/5358d689473ff21e4bbade1bd7c1414b286be4b8d61d86587f0de8558107da31", "status": "success", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-10-27T12:09:09.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/7a9ae84e1ed6997a44ea4313bb080bca1d570dd2cc0f9027bcac67659467a7a2", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-10-27T12:09:12.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/67c1d5cb53414c83b5bf6807a3d238902ff93221d45b62118b0262809cec06c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" }, { "r": "4.6.1", "os": "win", "version": "0.1.2", "date": "2026-10-27T12:09:11.000Z", "commit": "ff5bdba6245c6e20fcf98436c754cdb081172c50", "fileid": "https://r2.ropensci.org/614870e63e52ad7432e87e6148083936616b57639b3a37c0d3a947a275b36f8c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/patterninstitute/actions/runs/40500950313" } ] }