{"section":"Archive","endpoint":"GET archive/id/:id","description":"Uses the given identifier to return its latest version","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Archive","endpoint":"POST archive/id","description":"Retrieve the latest version for a set of identifiers","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET cafe/genetree/id/:id","description":"Retrieves a cafe tree of the gene tree using the gene tree stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET cafe/genetree/member/id/:id","description":"Retrieves the cafe tree of the gene tree that contains the gene / transcript / translation stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET cafe/genetree/member/symbol/:species/:symbol","description":"Retrieves the cafe tree of the gene tree that contains the gene identified by a symbol","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET family/id/:id","description":"Retrieves a family information using the family stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET family/member/id/:id","description":"Retrieves the information for all the families that contains the gene / transcript / translation stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET family/member/symbol/:species/:symbol","description":"Retrieves the information for all the families that contains the gene identified by a symbol","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET genetree/id/:id","description":"Retrieves a gene tree for a gene tree stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET genetree/member/id/:id","description":"Retrieves the gene tree that contains the gene / transcript / translation stable identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET genetree/member/symbol/:species/:symbol","description":"Retrieves the gene tree that contains the gene identified by a symbol","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET alignment/region/:species/:region","description":"Retrieves genomic alignments as separate blocks based on a region and species","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET homology/id/:id","description":"Retrieves homology information (orthologs) by Ensembl gene id","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Comparative Genomics","endpoint":"GET homology/symbol/:species/:symbol","description":"Retrieves homology information (orthologs) by symbol","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Cross References","endpoint":"GET xrefs/symbol/:species/:symbol","description":"Looks up an external symbol and returns all Ensembl objects linked to it. This can be a display name for a gene/transcript/translation, a synonym or an externally linked reference. If a gene's transcript is linked to the supplied symbol the service will return both gene and transcript (it supports transient links).","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Cross References","endpoint":"GET xrefs/id/:id","description":"Perform lookups of Ensembl Identifiers and retrieve their external references in other databases","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Cross References","endpoint":"GET xrefs/name/:species/:name","description":"Performs a lookup based upon the primary accession or display label of an external reference and returning the information we hold about the entry","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"EQTL","endpoint":"GET eqtl/stable_id/:species/:stable_id","description":"Returns the p-value for each SNP in a given gene (e.g. ENSG00000227232)","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"EQTL","endpoint":"GET eqtl/variant_name/:species/:variant_name","description":"Returns the p-values for a SNP (e.g. rs123)","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"EQTL","endpoint":"GET eqtl/tissue/:species/","description":"Returns all tissues currently available in the DB","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/analysis/:species","description":"List the names of analyses involved in generating Ensembl data.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/assembly/:species","description":"List the currently available assemblies for a species, along with toplevel sequences, chromosomes and cytogenetic bands.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/assembly/:species/:region_name","description":"Returns information about the specified toplevel sequence region for the given species.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/biotypes/:species","description":"List the functional classifications of gene models that Ensembl associates with a particular species. Useful for restricting the type of genes/transcripts retrieved by other endpoints.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/biotypes/groups/:group/:object_type","description":"Without argument the list of available biotype groups is returned. With :group argument provided, list the properties of biotypes within that group. Object type (gene or transcript) can be provided for filtering.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/biotypes/name/:name/:object_type","description":"List the properties of biotypes with a given name. Object type (gene or transcript) can be provided for filtering.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/compara/methods","description":"List all compara analyses available (an analysis defines the type of comparative data).","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/compara/species_sets/:method","description":"List all collections of species analysed with the specified compara method.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/comparas","description":"Lists all available comparative genomics databases and their data release. DEPRECATED: use info/genomes/division instead.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/data","description":"Shows the data releases available on this REST server. May return more than one release (unfrequent non-standard Ensembl configuration).","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/eg_version","description":"Returns the Ensembl Genomes version of the databases backing this service","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/external_dbs/:species","description":"Lists all available external sources for a species.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/divisions","description":"Get list of all Ensembl divisions for which information is available","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/genomes/:genome_name","description":"Find information about a given genome","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/genomes/accession/:accession","description":"Find information about genomes containing a specified INSDC accession","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/genomes/assembly/:assembly_id","description":"Find information about a genome with a specified assembly","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/genomes/division/:division_name","description":"Find information about all genomes in a given division. May be large for Ensembl Bacteria.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/genomes/taxonomy/:taxon_name","description":"Find information about all genomes beneath a given node of the taxonomy","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/ping","description":"Checks if the service is alive.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/rest","description":"Shows the current version of the Ensembl REST API.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/software","description":"Shows the current version of the Ensembl API used by the REST server.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/species","description":"Lists all available species, their aliases, available adaptor groups and data release.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/variation/:species","description":"List the variation sources used in Ensembl for a species.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/variation/consequence_types","description":"Lists all variant consequence types.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/variation/populations/:species:/:population_name","description":"List all individuals for a population from a species","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Information","endpoint":"GET info/variation/populations/:species","description":"List all populations for a species","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Linkage Disequilibrium","endpoint":"GET ld/:species/:id/:population_name","description":"Computes and returns LD values between the given variant and all other variants in a window centered around the given variant. The window size is set to 500 kb.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Linkage Disequilibrium","endpoint":"GET ld/:species/pairwise/:id1/:id2","description":"Computes and returns LD values between the given variants.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Linkage Disequilibrium","endpoint":"GET ld/:species/region/:region/:population_name","description":"Computes and returns LD values between all pairs of variants in the defined region.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Lookup","endpoint":"GET lookup/id/:id","description":"Find the species and database for a single identifier e.g. gene, transcript, protein","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Lookup","endpoint":"POST lookup/id","description":"Find the species and database for several identifiers. IDs that are not found are returned with no data.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Lookup","endpoint":"GET lookup/symbol/:species/:symbol","description":"Find the species and database for a symbol in a linked external database","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Lookup","endpoint":"POST lookup/symbol/:species/:symbol","description":"Find the species and database for a set of symbols in a linked external database. Unknown symbols are omitted from the response.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Mapping","endpoint":"GET map/cdna/:id/:region","description":"Convert from cDNA coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Mapping","endpoint":"GET map/cds/:id/:region","description":"Convert from CDS coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Mapping","endpoint":"GET map/:species/:asm_one/:region/:asm_two","description":"Convert the co-ordinates of one assembly to another","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Mapping","endpoint":"GET map/translation/:id/:region","description":"Convert from protein (translation) coordinates to genomic coordinates. Output reflects forward orientation coordinates as returned from the Ensembl API.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET ontology/ancestors/:id","description":"Reconstruct the entire ancestry of a term from is_a and part_of relationships","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET ontology/ancestors/chart/:id","description":"Reconstruct the entire ancestry of a term from is_a and part_of relationships.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET ontology/descendants/:id","description":"Find all the terms descended from a given term. By default searches are conducted within the namespace of the given identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET ontology/id/:id","description":"Search for an ontological term by its namespaced identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET ontology/name/:name","description":"Search for a list of ontological terms by their name","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET taxonomy/classification/:id","description":"Return the taxonomic classification of a taxon node","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET taxonomy/id/:id","description":"Search for a taxonomic term by its identifier or name","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Ontologies and Taxonomy","endpoint":"GET taxonomy/name/:name","description":"Search for a taxonomic id by a non-scientific name","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Overlap","endpoint":"GET overlap/id/:id","description":"Retrieves features (e.g. genes, transcripts, variants and more) that overlap a region defined by the given identifier.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Overlap","endpoint":"GET overlap/region/:species/:region","description":"Retrieves features (e.g. genes, transcripts, variants and more) that overlap a given region.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Overlap","endpoint":"GET overlap/translation/:id","description":"Retrieve features related to a specific Translation as described by its stable ID (e.g. domains, variants).","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Phenotype annotations","endpoint":"GET /phenotype/accession/:species/:accession","description":"Return phenotype annotations for genomic features given a phenotype ontology accession","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Phenotype annotations","endpoint":"GET /phenotype/gene/:species/:gene","description":"Return phenotype annotations for a given gene.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Phenotype annotations","endpoint":"GET /phenotype/region/:species/:region","description":"Return phenotype annotations that overlap a given genomic region.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Phenotype annotations","endpoint":"GET /phenotype/term/:species/:term","description":"Return phenotype annotations for genomic features given a phenotype ontology term","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/microarray/:microarray/vendor/:vendor","description":"Returns information about a specific microarray","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/epigenome","description":"Returns information about all epigenomes available for the given species","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET species/:species/binding_matrix/:binding_matrix_stable_id/","description":"Return the specified binding matrix","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/microarray","description":"Returns information about all microarrays available for the given species","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/microarray/:microarray/probe/:probe","description":"Returns information about a specific probe from a microarray","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/microarray/:microarray/probe_set/:probe_set","description":"Returns information about a specific probe_set from a microarray","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Regulation","endpoint":"GET regulatory/species/:species/id/:id","description":"Returns a RegulatoryFeature given its stable ID (e.g. ENSR00000082023)","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Sequence","endpoint":"GET sequence/id/:id","description":"Request multiple types of sequence by stable identifier. Supports feature masking and expand options.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Sequence","endpoint":"POST sequence/id","description":"Request multiple types of sequence by a stable identifier list.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Sequence","endpoint":"GET sequence/region/:species/:region","description":"Returns the genomic sequence of the specified region of the given species. Supports feature masking and expand options.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Sequence","endpoint":"POST sequence/region/:species","description":"Request multiple types of sequence by a list of regions.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Transcript Haplotypes","endpoint":"GET transcript_haplotypes/:species/:id","description":"Computes observed transcript haplotype sequences based on phased genotype data","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"GET variant_recoder/:species/:id","description":"Translate a variant identifier, HGVS notation or genomic SPDI notation to all possible variant IDs, HGVS and genomic SPDI","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"POST variant_recoder/:species","description":"Translate a list of variant identifiers, HGVS notations or genomic SPDI notations to all possible variant IDs, HGVS and genomic SPDI","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"GET variation/:species/:id","description":"Uses a variant identifier (e.g. rsID) to return the variation features including optional genotype, phenotype and population data","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"GET variation/:species/pmcid/:pmcid","description":"Fetch variants by publication using PubMed Central reference number (PMCID)","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"GET variation/:species/pmid/:pmid","description":"Fetch variants by publication using PubMed reference number (PMID)","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation","endpoint":"POST variation/:species/","description":"Uses a list of variant identifiers (e.g. rsID) to return the variation features including optional genotype, phenotype and population data","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/beacon","description":"Return Beacon information","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/beacon/query","description":"Return the Beacon response for allele information","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/beacon/query","description":"Return the Beacon response for allele information","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/features/:id","description":"Return the GA4GH record for a specific sequence feature given its identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/features/search","description":"Return a list of sequence annotation features in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/callsets/search","description":"Return a list of sets of genotype calls for specific samples in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/callsets/:id","description":"Return the GA4GH record for a specific CallSet given its identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/datasets/search","description":"Return a list of datasets in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/datasets/:id","description":"Return the GA4GH record for a specific dataset given its identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/featuresets/search","description":"Return a list of feature sets in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/featuresets/:id","description":"Return the GA4GH record for a specific featureSet given its identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/variants/:id","description":"Return the GA4GH record for a specific variant given its identifier.","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/variantannotations/search","description":"Return variant annotation information in GA4GH format for a region on a reference sequence","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/variants/search","description":"Return variant call information in GA4GH format for a region on a reference sequence","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/variantsets/search","description":"Return a list of variant sets in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/variantsets/:id","description":"Return the GA4GH record for a specific VariantSet given its identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/references/search","description":"Return a list of reference sequences in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/references/:id","description":"Return data for a specific reference in GA4GH format by id","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/referencesets/search","description":"Return a list of reference sets in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/referencesets/:id","description":"Return data for a specific reference set in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"POST ga4gh/variantannotationsets/search","description":"Return a list of annotation sets in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"Variation GA4GH","endpoint":"GET ga4gh/variantannotationsets/:id","description":"Return meta data for a specific annotation set in GA4GH format","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"GET vep/:species/hgvs/:hgvs_notation","description":"Fetch variant consequences based on a HGVS notation","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"POST vep/:species/hgvs","description":"Fetch variant consequences for multiple HGVS notations","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"GET vep/:species/id/:id","description":"Fetch variant consequences based on a variant identifier","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"POST vep/:species/id","description":"Fetch variant consequences for multiple ids","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"GET vep/:species/region/:region/:allele/","description":"Fetch variant consequences","last_update_date":"Sat Oct 30 14:42:46 2021"} {"section":"VEP","endpoint":"POST vep/:species/region","description":"Fetch variant consequences for multiple regions","last_update_date":"Sat Oct 30 14:42:46 2021"}