Package: quincunx
Type: Package
Title: REST API Client for the 'PGS' Catalog
Version: 0.1.10
Authors@R: c(
    person(given = "Ramiro", family = "Magno",
      email = "rmagno@pattern.institute",
      role = c("aut", "cre"),
      comment = c(ORCID = "0000-0001-5226-3441")),
    person(given = "Isabel", family = "Duarte",
      email = "iduarte.scientist@gmail.com",
      role = "aut",
      comment = c(ORCID = "0000-0003-0060-2936")),
    person(given = "Ana-Teresa", family = "Maia",
      email = "maia.anateresa@gmail.com", role = "aut", 
      comment = c(ORCID = "0000-0002-0454-9207")),
    person("CINTESIS", role = c("cph", "fnd")),
    person("Pattern Institute", role = c("cph", "fnd"), comment = c(ROR = "04jrgd746"))
    )
Description: Programmatic access to the 'PGS' Catalog. This package
        provides easy access to 'PGS' Catalog data by accessing the
        REST API <https://www.pgscatalog.org/rest/>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Suggests: testthat, knitr, rmarkdown, ggplot2
Imports: stringr, vroom, purrr, glue, dplyr, tidyjson, tibble,
        lubridate, rlang, tidyr, httr, utils, rvest, progress, methods,
        writexl, memoise, readr
Collate: 'ancestry_categories.R' 'cc.R' 'class-cohorts.R'
        'class-performance_metrics.R' 'class-publications.R'
        'class-releases.R' 'class-sample_sets.R' 'class-scores.R'
        'class-trait_categories.R' 'class-traits.R' 'clear_cache.R'
        'contains_question_mark.R' 'count.R' 'delay.R'
        'drop_metadata_cols.R' 'first_non_na.R' 'generics.R' 'get.R'
        'get_ancestry_categories.R' 'get_cohorts.R' 'get_column.R'
        'get_performance_metrics.R' 'get_publications.R'
        'get_releases.R' 'get_sample_sets.R' 'get_scores.R'
        'get_trait_categories.R' 'get_traits.R' 'id_mapping.R'
        'is_json_empty.R' 'is_paginated.R' 'is_pgs_id.R'
        'is_pubmed_id.R' 'messages.R' 'n_pages.R' 'nr_to_na.R'
        'offsets.R' 'open_in_dbsnp.R' 'open_in_pgs_catalog.R'
        'open_in_pubmed.R' 'parse-ancestry_categories.R'
        'parse-cohorts.R' 'parse-performance_metrics.R'
        'parse-publications.R' 'parse-releases.R' 'parse-sample_sets.R'
        'parse-scores.R' 'parse-trait_categories.R' 'parse-traits.R'
        'parse_estimate.R' 'read_file_column_names.R'
        'read_pgs_scoring_file.R' 'relocate_metadata_cols.R'
        'remap_id.R' 'request.R' 's4-utils.R' 'stages.R' 'sure.R'
        'unwrap_cohort.R' 'unwrap_demographics.R' 'unwrap_efotrait.R'
        'unwrap_interval.R' 'unwrap_publication.R' 'unwrap_sample.R'
        'warnings.R' 'write_xlsx.R'
Depends: R (>= 4.1.0)
URL: https://github.com/ramiromagno/quincunx,
        https://rmagno.eu/quincunx/
BugReports: https://github.com/ramiromagno/quincunx/issues
Roxygen: list(markdown = TRUE)
Config/Needs/website: patterninstitute/chic
Config/pak/sysreqs: libicu-dev libxml2-dev libssl-dev libx11-dev
        zlib1g-dev
Repository: https://patterninstitute.r-universe.dev
Date/Publication: 2025-05-27 22:07:23 UTC
RemoteUrl: https://github.com/ramiromagno/quincunx
RemoteRef: HEAD
RemoteSha: cda2544c275be0bddeffac8419d77974426fa114
NeedsCompilation: no
Packaged: 2026-07-04 06:20:05 UTC; root
Author: Ramiro Magno [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5226-3441>),
  Isabel Duarte [aut] (ORCID: <https://orcid.org/0000-0003-0060-2936>),
  Ana-Teresa Maia [aut] (ORCID: <https://orcid.org/0000-0002-0454-9207>),
  CINTESIS [cph, fnd],
  Pattern Institute [cph, fnd] (ROR: <https://ror.org/04jrgd746>)
Maintainer: Ramiro Magno <rmagno@pattern.institute>