Package: vermeulen
Type: Package
Title: Biomarker Data Set by Vermeulen et al. (2009)
Version: 0.1.2
Authors@R: c(
    person(given = "Ramiro", family = "Magno", email = "rmagno@pattern.institute",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5226-3441")),
    person("Pattern Institute",
    role = c("cph", "fnd"))
    )
Description: The biomarker data set by Vermeulen et al. (2009)
        <doi:10.1016/S1470-2045(09)70154-8> is provided. The data
        source, however, is by Ruijter et al. (2013)
        <doi:10.1016/j.ymeth.2012.08.011>. The original data set may be
        downloaded from
        <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>.
        This data set is for a real-time quantitative polymerase chain
        reaction (PCR) experiment that comprises the raw fluorescence
        data of 24,576 amplification curves. This data set comprises 59
        genes of interest and 5 reference genes. Each gene was assessed
        on 366 neuroblastoma complementary DNA (cDNA) samples and on 18
        standard dilution series samples (10-fold 5-point dilution
        series x 3 replicates + no template controls (NTC) x 3
        replicates).
License: CC BY 4.0
Encoding: UTF-8
RoxygenNote: 7.3.1
Depends: R (>= 2.10)
Roxygen: list(markdown = TRUE)
Imports: memoise
Suggests: dplyr, ggplot2, rmarkdown, spelling, testthat (>= 3.0.0),
        tibble
Language: en-US
URL: https://github.com/ramiromagno/vermeulen,
        https://rmagno.eu/vermeulen/
BugReports: https://github.com/ramiromagno/vermeulen/issues
Config/testthat/edition: 3
Repository: https://patterninstitute.r-universe.dev
Date/Publication: 2024-04-22 20:56:30 UTC
RemoteUrl: https://github.com/ramiromagno/vermeulen
RemoteRef: HEAD
RemoteSha: ff5bdba6245c6e20fcf98436c754cdb081172c50
NeedsCompilation: no
Packaged: 2026-07-03 20:26:44 UTC; root
Author: Ramiro Magno [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5226-3441>),
  Pattern Institute [cph, fnd]
Maintainer: Ramiro Magno <rmagno@pattern.institute>