Package: grantham 0.1.1

Ramiro Magno

grantham: Calculate the 'Grantham' Distance

A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

grantham_0.1.1.tar.gz
grantham_0.1.1.zip(r-4.5)grantham_0.1.1.zip(r-4.4)grantham_0.1.1.zip(r-4.3)
grantham_0.1.1.tgz(r-4.4-any)grantham_0.1.1.tgz(r-4.3-any)
grantham_0.1.1.tar.gz(r-4.5-noble)grantham_0.1.1.tar.gz(r-4.4-noble)
grantham_0.1.1.tgz(r-4.4-emscripten)grantham_0.1.1.tgz(r-4.3-emscripten)
grantham.pdf |grantham.html✨
grantham/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/maialab/grantham/issues

On CRAN:

9 exports 4 stars 1.00 score 21 dependencies 1 dependents 7 scripts 412 downloads

Last updated 2 months agofrom:6768b1f580. Checks:OK: 7. Indexed: yes.

Exports:%>%amino_acid_pairsamino_acidsas_one_letteras_three_lettergrantham_distancegrantham_distance_exactgrantham_distance_originalgrantham_equation

Dependencies:clicpp11dplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr