gwasrapidd - 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
'GWAS' R 'API' Data Download. This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.
Last updated 9 months ago
thirdpartyclientbiomedicalinformaticsgenomewideassociationsnpassociation-studiesgwas-cataloghumanrest-clienttraittrait-ontology
90 stars 4.21 score 58 dependencies 2 dependentswig - Import WIG Data into R in Long Format
Import WIG data into R in long format.
Last updated 2 years ago
1.91 score 18 dependenciesquincunx - REST API Client for the 'PGS' Catalog
Programmatic access to the 'PGS' Catalog. This package provides easy access to 'PGS' Catalog data by accessing the REST API <https://www.pgscatalog.org/rest/>.
Last updated 1 years ago
gwaspolygenic-risk-scorespolygenic-scores
5 stars 1.19 score 48 dependenciesruijter - Technical Data Sets by Ruijter et al. (2013)
The real-time quantitative polymerase chain reaction (qPCR) technical data sets by Ruijter et al. (2013) <doi:10.1016/j.ymeth.2012.08.011>: (i) the four-point 10-fold dilution series; (ii) 380 replicates; and (iii) the competimer data set. These three data sets can be used to benchmark qPCR methods. Original data set is available at <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>. This package fixes incorrect annotations in the original data sets.
Last updated 5 months ago
qpcr
3 stars 1.07 score 11 dependenciesagvgd - An R Implementation of the 'Align-GVGD' Method
'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.
Last updated 9 months ago
2 stars 1.03 score 33 dependenciesgrantham - Calculate the 'Grantham' Distance
A minimal set of routines to calculate the 'Grantham' distance <doi:10.1126/science.185.4154.862>. The 'Grantham' distance attempts to provide a proxy for the evolutionary distance between two amino acids based on three key chemical properties: composition, polarity and molecular volume. In turn, evolutionary distance is used as a proxy for the impact of missense mutations. The higher the distance, the more deleterious the substitution is expected to be.
Last updated 2 months ago
4 stars 1.00 score 21 dependencies 1 dependentsrutledge - Real-Time PCR Data Sets by Rutledge et al. (2004)
Real-time quantitative polymerase chain reaction (qPCR) data by Rutledge et al. (2004) <doi:10.1093/nar/gnh177> in tidy format. The data comprises a six-point, ten-fold dilution series, repeated in five independent runs, for two different amplicons. In each run, each standard concentration is replicated four times. For the original raw data file see the Supplementary Data section: <https://academic.oup.com/nar/article/32/22/e178/2375678#supplementary-data>.
Last updated 5 months ago
1 stars 0.89 score 11 dependencieseunis.habitats - EUNIS Habitat Classification
The EUNIS habitat classification is a comprehensive pan-European system for habitat identification <https://www.eea.europa.eu/data-and-maps/data/eunis-habitat-classification-1>. This is an R data package providing the EUNIS classification system. The classification is hierarchical and covers all types of habitats from natural to artificial, from terrestrial to freshwater and marine. The habitat types are identified by specific codes, names and descriptions and come with schema crosswalks to other habitat typologies.
Last updated 1 years ago
eunishabitat
2 stars 0.83 score 11 dependenciesensemblr - R Client for the Ensembl REST API
R Client for the Ensembl REST API.
Last updated 17 days ago
ensemblensembl-rest
4 stars 0.82 score 47 dependenciesdataset.json.examples - Dataset-JSON Example Files
An R data package providing a set of Dataset-JSON files comprising SDTM and ADaM datasets. Examples are originally from: <https://github.com/cdisc-org/DataExchange-DatasetJson>.
Last updated 8 months ago
1 stars 0.36 score 11 dependenciesgeisha - GEISHA Expression Data
GEISHA expression data. These data are obtained from GEISHA <http://geisha.arizona.edu/geisha/downloads.jsp/>.
Last updated 3 years ago
1 stars 0.09 score 36 dependencies