Package: agvgd 0.1.2

Ramiro Magno

agvgd: An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <http://agvgd.hci.utah.edu/>.

Authors:Ramiro Magno [aut, cre], Isabel Duarte [aut], Ana-Teresa Maia [aut], CINTESIS [cph, fnd]

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agvgd.pdf |agvgd.html✨
agvgd/json (API)
NEWS

# Install 'agvgd' in R:
install.packages('agvgd', repos = c('https://patterninstitute.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/maialab/agvgd/issues

On CRAN:

3.00 score 2 stars 7 scripts 295 downloads 16 exports 33 dependencies

Last updated 11 months agofrom:4e746e319e. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 10 2024
R-4.5-winOKNov 10 2024
R-4.5-linuxOKNov 10 2024
R-4.4-winOKNov 10 2024
R-4.4-macOKNov 10 2024
R-4.3-winOKNov 10 2024
R-4.3-macOKNov 10 2024

Exports:%>%agvgdalignment_fileamino_acidscpv_rangesdevgdgvpoi_to_resprofile_to_alignmentread_agvgdweb_resultsread_alignmentread_substitutionsres_to_poiwrite_alignmentwrite_substitutions

Dependencies:ade4clicpp11crayondplyrfansigenericsgluegranthamlatticelifecyclemagrittrMASSnlmepillarpixmappkgconfigpurrrR6RcppRcppArmadillorlangsegmentedseqinrspstringistringrtibbletidyrtidyselectutf8vctrswithr