Package: vermeulen 0.1.2

Ramiro Magno

vermeulen: Biomarker Data Set by Vermeulen et al. (2009)

The biomarker data set by Vermeulen et al. (2009) <doi:10.1016/S1470-2045(09)70154-8> is provided. The data source, however, is by Ruijter et al. (2013) <doi:10.1016/j.ymeth.2012.08.011>. The original data set may be downloaded from <https://medischebiologie.nl/wp-content/uploads/2019/02/qpcrdatamethods.zip>. This data set is for a real-time quantitative polymerase chain reaction (PCR) experiment that comprises the raw fluorescence data of 24,576 amplification curves. This data set comprises 59 genes of interest and 5 reference genes. Each gene was assessed on 366 neuroblastoma complementary DNA (cDNA) samples and on 18 standard dilution series samples (10-fold 5-point dilution series x 3 replicates + no template controls (NTC) x 3 replicates).

Authors:Ramiro Magno [aut, cre], Pattern Institute [cph, fnd]

vermeulen_0.1.2.tar.gz
vermeulen_0.1.2.zip(r-4.7)vermeulen_0.1.2.zip(r-4.6)vermeulen_0.1.2.zip(r-4.5)
vermeulen_0.1.2.tgz(r-4.6-any)vermeulen_0.1.2.tgz(r-4.5-any)
vermeulen_0.1.2.tar.gz(r-4.7-any)vermeulen_0.1.2.tar.gz(r-4.6-any)
vermeulen_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
vermeulen/json (API)
NEWS

# Install 'vermeulen' in R:
install.packages('vermeulen', repos = c('https://patterninstitute.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ramiromagno/vermeulen/issues

Pkgdown/docs site:https://rmagno.eu

On CRAN:

Conda:

qpcrqpcr-analysis

3.18 score 3 stars 2 scripts 637 downloads 1 exports 4 dependencies

Last updated from:ff5bdba624. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK135
source / vignettesOK225
linux-release-x86_64OK127
macos-release-arm64OK87
macos-oldrel-arm64OK83
windows-develOK90
windows-releaseOK84
windows-oldrelOK80
wasm-releaseOK102

Exports:get_biomarker_dataset

Dependencies:cachemfastmapmemoiserlang